When using manure fertilizer, keep antibiotic resistance in check

When using manure fertilizer, keep antibiotic resistance in check

Manure is used as fertilizer on many fields, but understanding the best method can help avoid harm from antimicrobial resistant bacteria

A single cow can generate between 43 and 120 pounds of manure a day – valuable fertilizer for farmers' crops. But manure can also host antimicrobial resistant bacteria.

Related: Will winter manure and fertilizer spreading be prohibited?

Most bacteria are harmless, but pathogens that can originate from cattle manure include E. coli, Salmonella, and Yersinia. These bacteria can cause fever, nausea, diarrhea and vomiting.

Tim McAllister, research scientist in ruminant microbiology and nutrition at the Lethbridge Research Centre of Agriculture and Agri-Food Canada in Alberta, Canada, has been testing creative ways to target antimicrobial resistance genes in manure.

Manure is used as fertilizer on many fields, but understanding the best method can help avoid harm from antimicrobial resistant bacteria

"Not all bacteria are bad," said McAllister, "The trick is finding which become resistant and whether or not those will affect human health."

Antimicrobials can keep cattle healthy, but when using antibiotics, "bacterial resistance is inevitable," said McAllister.

"There's always trade-offs in nature. It really is a matter of which bacteria become resistant and if it has any implications for human health."

In cattle, antibiotic residues can be excreted in feces and urine. "Even the most pristine soils harbor antibiotic resistant bacteria. Then it's a matter of figuring out if these resistant bacteria exchange DNA with other bacteria that could cause human infections. It's a remote possibility considering that most bacteria that survive well in the human body do less well in the broader environment," McAllister says.

Tim McAllister, research scientist in ruminant microbiology and nutrition at the Lethbridge Research Centre of Agriculture and Agri-Food Canada in Alberta, Canada, has been testing creative ways to target antimicrobial resistance genes in manure.

Control methods
Fortunately, most bacteria can't survive high temperatures. For this reason, farmers employ "manure-cooking" strategies to kill bacteria before it's applied to the land. One strategy is to stockpile manure in large pyramid-shaped mounds. The heat generated by the dense piles of manure acts as an oven. Most bacteria die after being exposed to temperatures above 131 degrees Fahrenheit or higher over a period of a few days.

Windrow composting is another type of manure management. Instead of large, passive piles, the manure is kept in long rows and is regularly churned to extend the heating period with temperatures as high as 160 degrees Fahrenheit.

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Researchers wanted to know which method was most reliable to kill the bacteria and degrade the DNA associated with antibiotic resistance. They used manure from cattle treated with various antibiotics to find that composting works best for killing bacteria with resistance genes. The mixing process also speeds up decomposition and reduces the volume of manure.

Related: Research Helps Control Odors from Using Manure Fertilizer

"Composting is an active process," McAllister said, "You churn up the manure so that all the materials achieve a higher temperature."

Storing manure in stockpiles works, but not as thoroughly. The heat tends to concentrate in the middle of the pile and doesn't reach the outer edges.

Future experiments could observe the journey of bacteria from farm to the surrounding environment. McAllister described an ideal "systems approach" experiment to discover where resistant bacteria end up if it hasn't been destroyed by composting or stockpiling.

"The concentration of bacteria is the issue, and if those concentrations travel. The journey for most bacteria from the animal through the environment to people is a tough one, Most bacteria do not make it. Manure management practices such as composting and stockpiling can make this journey for bacteria even more difficult," he said.

Tracking the dynamics of this bacterial journey requires a host of scientists and a lot of grant writing.

"Not my favorite part," says McAllister. "But I do love moving into new areas of research."

Source: American Society of Agronomy

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